Horizontal gene transfer as a source of conflict and cooperation in prokaryotes Rebecca J Hall, Fiona J Whelan, James O McInerney, Maria Rosa Domingo Sananes. (2020) Frontiers Microbiology. A Perspectives article on HGT and its impact on pangenomes.

Coinfinder: Detecting Significant Associations and Dissociations in Pangenomes Fiona J. Whelan*, Martin Rusilowicz*, and James O. McInerney. (2020) Microbial Genomics. A software paper introducing Coinfinder for the detection of coincident (co-occurring and avoiding) gene sets in pangenome datasets.

The Evolution of the class A Scavenger Receptors. Whelan FJ, Meehan CJ, Golding GB, McConkey BJ, & Bowdish DME (2012) BMC Evolutionary Biology. The class A scavenger receptors are a subclass of a diverse family of proteins defined based on their ability to bind modified lipoproteins. The 5 members of this family are strikingly variable in their protein structure and function, which begged the question as to their evolutionary relationships.

Horizontal gene transfer as a source of conflict and cooperation in prokaryotes Rebecca J Hall, Fiona J Whelan, James O McInerney, Maria Rosa Domingo Sananes. (2020) Frontiers Microbiology. A Perspectives article on HGT and its impact on pangenomes.

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